PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0020500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 290aa    MW: 31252.9 Da    PI: 6.9285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0020500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09453154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  Spipo16G0020500  4 RKVQKADREKLRRDRLNEQFLELGNALDPD----RPKNDKATILADTIQMLKDL 53
                     5677889********************997....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.8E-13376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.913353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-7457No hitNo description
SuperFamilySSF474591.07E-13473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-7959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAARKVQKAD REKLRRDRLN EQFLELGNAL DPDRPKNDKA TILADTIQML KDLMAQVNKL  60
KSEYEALSEE SSELTQEKNE LREEKATIKS ELDVLSAQYQ QRLRVVFPWA AMDASVVMGP  120
PQPYPFPMPV PIPSGPMPMH PSLQPYPFFH GQTHGSLPSP FMPYPNPCSQ HAEQPSVALR  180
PGSNKSPGSG KNDPASKLPD RQCRSGAEKG DSFSDVATEL ELKTPGSALP ACSKSPSRGQ  240
DAKAKKGEAW QSQRKSGGAA GAASSSSRCS SSVQDSSSSN GDDGSVAED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920215.11e-110PREDICTED: transcription factor bHLH121
SwissprotQ9LT231e-70BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0J8CBN71e-93A0A0J8CBN7_BETVU; Uncharacterized protein
STRINGSolyc01g111130.2.12e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-51bHLH family protein